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ATCC aav2 reference standard material
Figure 1. TCID50 workflow with qPCR and ddPCR as an endpoint measurement. TCID50 is a cell-based assay to measure infectious virus titer. The assay workflow is as follows: (A) Day 0: cell plating. HeLaRC32 cells were plated in 96-well plate at the density of 4.0E+05 cells/mL. (B) Day 1: infection. Twenty-four hours after cell plating, series of diluted viral vectors were added to the wells accordingly, along with Ad5 helper virus; the infection plate layout is explained in Supplementary Table S1 (gradient blue code is for serial dilution of AAV-2 co-infected with Ad5, green is for Ad5 control-only wells, and gray is for UI wells. (C) Day 3: cell lysis. Forty-eight hours after infection, cells were lysed using Proteinase K solution; Day 3–9: endpoint detection. Cell lysate was diluted 1:50 or 1:100 in TE buffer before use with ddPCR or qPCR runs. The results were then analyzed according to the Spearman-Ka¨rber method to calculate the TCID50 in terms of infectious titer (in IU/mL) and specific infectivity (vg/IU). AAV-2, adeno-associated virus-2; ddPCR, droplet digital PCR; IU, infectious unit; qPCR, quantitative PCR; TCID50, 50% tissue culture infective dose; TE, Tris-EDTA buffer; vg, viral genome.
Aav2 Reference Standard Material, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 1. TCID50 workflow with qPCR and ddPCR as an endpoint measurement. TCID50 is a cell-based assay to measure infectious virus titer. The assay workflow is as follows: (A) Day 0: cell plating. HeLaRC32 cells were plated in 96-well plate at the density of 4.0E+05 cells/mL. (B) Day 1: infection. Twenty-four hours after cell plating, series of diluted viral vectors were added to the wells accordingly, along with Ad5 helper virus; the infection plate layout is explained in Supplementary Table S1 (gradient blue code is for serial dilution of AAV-2 co-infected with Ad5, green is for Ad5 control-only wells, and gray is for UI wells. (C) Day 3: cell lysis. Forty-eight hours after infection, cells were lysed using Proteinase K solution; Day 3–9: endpoint detection. Cell lysate was diluted 1:50 or 1:100 in TE buffer before use with ddPCR or qPCR runs. The results were then analyzed according to the Spearman-Ka¨rber method to calculate the TCID50 in terms of infectious titer (in IU/mL) and specific infectivity (vg/IU). AAV-2, adeno-associated virus-2; ddPCR, droplet digital PCR; IU, infectious unit; qPCR, quantitative PCR; TCID50, 50% tissue culture infective dose; TE, Tris-EDTA buffer; vg, viral genome.
Video Based Sarcomere Detection System, supplied by IonOptix, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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MathWorks Inc modelling real time video processing system
Figure 1. TCID50 workflow with qPCR and ddPCR as an endpoint measurement. TCID50 is a cell-based assay to measure infectious virus titer. The assay workflow is as follows: (A) Day 0: cell plating. HeLaRC32 cells were plated in 96-well plate at the density of 4.0E+05 cells/mL. (B) Day 1: infection. Twenty-four hours after cell plating, series of diluted viral vectors were added to the wells accordingly, along with Ad5 helper virus; the infection plate layout is explained in Supplementary Table S1 (gradient blue code is for serial dilution of AAV-2 co-infected with Ad5, green is for Ad5 control-only wells, and gray is for UI wells. (C) Day 3: cell lysis. Forty-eight hours after infection, cells were lysed using Proteinase K solution; Day 3–9: endpoint detection. Cell lysate was diluted 1:50 or 1:100 in TE buffer before use with ddPCR or qPCR runs. The results were then analyzed according to the Spearman-Ka¨rber method to calculate the TCID50 in terms of infectious titer (in IU/mL) and specific infectivity (vg/IU). AAV-2, adeno-associated virus-2; ddPCR, droplet digital PCR; IU, infectious unit; qPCR, quantitative PCR; TCID50, 50% tissue culture infective dose; TE, Tris-EDTA buffer; vg, viral genome.
Modelling Real Time Video Processing System, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 1. TCID50 workflow with qPCR and ddPCR as an endpoint measurement. TCID50 is a cell-based assay to measure infectious virus titer. The assay workflow is as follows: (A) Day 0: cell plating. HeLaRC32 cells were plated in 96-well plate at the density of 4.0E+05 cells/mL. (B) Day 1: infection. Twenty-four hours after cell plating, series of diluted viral vectors were added to the wells accordingly, along with Ad5 helper virus; the infection plate layout is explained in Supplementary Table S1 (gradient blue code is for serial dilution of AAV-2 co-infected with Ad5, green is for Ad5 control-only wells, and gray is for UI wells. (C) Day 3: cell lysis. Forty-eight hours after infection, cells were lysed using Proteinase K solution; Day 3–9: endpoint detection. Cell lysate was diluted 1:50 or 1:100 in TE buffer before use with ddPCR or qPCR runs. The results were then analyzed according to the Spearman-Ka¨rber method to calculate the TCID50 in terms of infectious titer (in IU/mL) and specific infectivity (vg/IU). AAV-2, adeno-associated virus-2; ddPCR, droplet digital PCR; IU, infectious unit; qPCR, quantitative PCR; TCID50, 50% tissue culture infective dose; TE, Tris-EDTA buffer; vg, viral genome.
Infrared Video Based Eye Tracker Eyelink Ii, supplied by SR Research, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Figure 1. TCID50 workflow with qPCR and ddPCR as an endpoint measurement. TCID50 is a cell-based assay to measure infectious virus titer. The assay workflow is as follows: (A) Day 0: cell plating. HeLaRC32 cells were plated in 96-well plate at the density of 4.0E+05 cells/mL. (B) Day 1: infection. Twenty-four hours after cell plating, series of diluted viral vectors were added to the wells accordingly, along with Ad5 helper virus; the infection plate layout is explained in Supplementary Table S1 (gradient blue code is for serial dilution of AAV-2 co-infected with Ad5, green is for Ad5 control-only wells, and gray is for UI wells. (C) Day 3: cell lysis. Forty-eight hours after infection, cells were lysed using Proteinase K solution; Day 3–9: endpoint detection. Cell lysate was diluted 1:50 or 1:100 in TE buffer before use with ddPCR or qPCR runs. The results were then analyzed according to the Spearman-Ka¨rber method to calculate the TCID50 in terms of infectious titer (in IU/mL) and specific infectivity (vg/IU). AAV-2, adeno-associated virus-2; ddPCR, droplet digital PCR; IU, infectious unit; qPCR, quantitative PCR; TCID50, 50% tissue culture infective dose; TE, Tris-EDTA buffer; vg, viral genome.

Journal: Human gene therapy

Article Title: Improvement of Precision in Recombinant Adeno-Associated Virus Infectious Titer Assay with Droplet Digital PCR as an Endpoint Measurement.

doi: 10.1089/hum.2023.014

Figure Lengend Snippet: Figure 1. TCID50 workflow with qPCR and ddPCR as an endpoint measurement. TCID50 is a cell-based assay to measure infectious virus titer. The assay workflow is as follows: (A) Day 0: cell plating. HeLaRC32 cells were plated in 96-well plate at the density of 4.0E+05 cells/mL. (B) Day 1: infection. Twenty-four hours after cell plating, series of diluted viral vectors were added to the wells accordingly, along with Ad5 helper virus; the infection plate layout is explained in Supplementary Table S1 (gradient blue code is for serial dilution of AAV-2 co-infected with Ad5, green is for Ad5 control-only wells, and gray is for UI wells. (C) Day 3: cell lysis. Forty-eight hours after infection, cells were lysed using Proteinase K solution; Day 3–9: endpoint detection. Cell lysate was diluted 1:50 or 1:100 in TE buffer before use with ddPCR or qPCR runs. The results were then analyzed according to the Spearman-Ka¨rber method to calculate the TCID50 in terms of infectious titer (in IU/mL) and specific infectivity (vg/IU). AAV-2, adeno-associated virus-2; ddPCR, droplet digital PCR; IU, infectious unit; qPCR, quantitative PCR; TCID50, 50% tissue culture infective dose; TE, Tris-EDTA buffer; vg, viral genome.

Article Snippet: rAAV, AAV2 reference standard material (AAV2 rss) was purchased from ATCC (Cat. No. VR-1616).22,23 Human adenovirus 5 (Ad5) was obtained from ATCC (Cat. No. VR-1516).

Techniques: Cell Based Assay, Virus, Infection, Serial Dilution, Control, Lysis, Digital PCR, Real-time Polymerase Chain Reaction